People chronically infected with the hepatitis C virus currently have only one treatment option: a combination of polyethylene glycol (PEG)-ylated interferon alpha and ribavirin (RBV). Not only does this drug regimen fail to eradicate the virus in about half of all patients who receive it, but even when it does work the side effects can be so bad that treatment has to be scaled back or abandoned altogether.
In up to two-thirds of all hepatitis C patients, RBV treatment leads to the destruction of red blood cells and a decrease in the amount of oxygen that can be transported throughout the body, a condition called hemolytic anemia. New research, published online yesterday in the journal Nature, shows that genetic variants that cause a normally benign enzyme deficiency actually offer some protection against this condition.
Duke researchers Jacques Fellay, Alexander Thompson and Dongliang Ge, along with colleagues from the Schering-Plough Research Institute and the Johns Hopkins School of Medicine, studied about 1300 European-Americans, 200 African-Americans, and 100 Hispanics receiving hepatitis C treatment. The patients had their hemoglobin (the oxygen-carrying protein in red blood cells) levels measured at the beginning of their treatment and at the four-week mark, the point when many patients must begin treatment to stimulate red blood cell production due to RBV-induced anemia. The researchers also analyzed the patients’ DNA to look for genetic variants associated with hemoglobin level changes.
Several variants on chromosome 20 showed a significant association with maintenance of good hemoglobin levels after RBV treatment. Deeper analysis of this DNA region revealed that the effect could be traced to two variations in the ITPA gene.
The ITPA gene encodes an enzyme that helps breakdown a substance called inosine triphosphate in cells. The less common versions of the two variations the researchers identified (A at rs1127354 and C at rs7270101) both reduce the function of the ITPA enzyme. In most people this isn’t a problem. For people taking drugs called thiopurines, which are used to prevent organ rejection in transplant patients and to treat leukemias and autoimmune disease, reduced ITPA activity may lead to toxicity. What the new study found is that for people receiving treatment for hepatitis C, less ITPA enzyme function is actually a good thing.
Of the people in the current study predicted to have less than one-third of the normal ITPA activity due to their genetics, none ended up with hemoglobin levels below the level traditionally set as a threshold for RBV dose reduction. Of those with normal ITPA levels, 11.7% had their hemoglobin levels dip into the danger zone.
(23andMe does not currently provide data for rs7270101. But we do provide data for rs1127354. Complete Edition customers can use the Browse Raw Data feature to see their genotype for this SNP. Each SNP was shown to have an independent effect on hemoglobin levels in the face of RBV treatment.)
More research into the genetics of RBV-induced anemia will be needed. Although the exact effect varied among the different populations studied, the researchers estimate that about 20-30% of the variability in hemoglobin level reduction in response to RBV treatment was explained by rs1127354 and rs7270101. There was no significant association between these SNPs and the efficacy of hepatitis C treatment.
Because having low levels of ITPA enzyme activity does not seem to cause any problems for most people, the authors suggest that drugs that inhibit this enzyme could be developed so that people receiving RBV treatment for hepatitis C could be protected against anemia, even if they do not carry the protective genetic variations.
Illustration of ITPA protein structure: Emw
SNPwatch gives you the latest news about research linking various traits and conditions to individual genetic variations. These studies are exciting because they offer a glimpse into how genetics may affect our bodies and health; but in most cases, more work is needed before this research can provide information of value to individuals. For that reason it is important to remember that like all information we provide, the studies we describe in SNPwatch are for research and educational purposes only. SNPwatch is not intended to be a substitute for professional medical advice; you should always seek the advice of your physician or other appropriate healthcare professional with any questions you may have regarding diagnosis, cure, treatment or prevention of any disease or other medical condition.